Package: waves 0.2.5.9000

Jenna Hershberger

waves: Vis-NIR Spectral Analysis Wrapper

Originally designed application in the context of resource-limited plant research and breeding programs, 'waves' provides an open-source solution to spectral data processing and model development by bringing useful packages together into a streamlined pipeline. This package is wrapper for functions related to the analysis of point visible and near-infrared reflectance measurements. It includes visualization, filtering, aggregation, preprocessing, cross-validation set formation, model training, and prediction functions to enable open-source association of spectral and reference data. This package is documented in a peer-reviewed manuscript in the Plant Phenome Journal <doi:10.1002/ppj2.20012>. Specialized cross-validation schemes are described in detail in Jarquín et al. (2017) <doi:10.3835/plantgenome2016.12.0130>. Example data is from Ikeogu et al. (2017) <doi:10.1371/journal.pone.0188918>.

Authors:Jenna Hershberger [aut, cre], Michael Gore [ths], NSF BREAD IOS-1543958 [fnd]

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Peer review:

Bug tracker:https://github.com/gorelab/waves/issues

On CRAN:

18 exports 6 stars 2.02 score 141 dependencies 3 mentions 40 scripts 329 downloads

Last updated 5 months agofrom:82422d55d0. Checks:OK: 7. Indexed: yes.

Exports:aggregate_spectraAggregateSpectraDoPreprocessingfilter_spectraFilterSpectraformat_cvFormatCVplot_spectraPlotSpectrapredict_spectraPredictFromSavedModelpretreat_spectrasave_modelSaveModeltest_spectraTestModelPerformancetrain_spectraTrainSpectralModel

Dependencies:askpassbase64encbaselineBiasedUrnbitbit64bslibcachemcaretclassclassIntclicliprclockcodetoolscolorspacecpp11crayondata.tableDBIdiagramdigestdplyre1071epiRevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforeachfsfuturefuture.applygdtoolsgenericsggplot2globalsgluegowergtablehardhathighrhmshtmltoolsipredisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelavalifecyclelimSolvelistenvlpSolvelubridatemagrittrMASSmathjaxrMatrixmemoisemgcvmimeModelMetricsmunsellnlmennetnumDerivofficeropensslpanderparallellypillarpkgconfigplsplyrprettyunitspROCprodlimprogressprogressrprospectrproxypurrrquadprogR6raggrandomForestrappdirsRColorBrewerRcppRcppArmadilloreadrrecipesreshape2rlangrmarkdownrparts2sassscalessfshapesignalSparseMspectaclesSQUAREMstringistringrsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttimechangetimeDatetinytextzdbunitsutf8uuidvctrsviridisLitevroomwithrwkxfunxml2yamlzipzoo