Package: waves
Title: Vis-NIR Spectral Analysis Wrapper
Version: 0.2.7.9000
Authors@R: 
    c(person(given = "Jenna",
             family = "Hershberger",
             role = c("aut", "cre"),
             email = "jmh579@cornell.edu",
             comment = c(ORCID = "0000-0002-3147-6867")),
      person(given = "Michael",
             family = "Gore",
             role = "ths"),
      person(given = "NSF BREAD IOS-1543958",
             role = "fnd"))
Maintainer: Jenna Hershberger <jmh579@cornell.edu>
Description: Originally designed application in the context of
        resource-limited plant research and breeding programs, 'waves'
        provides an open-source solution to spectral data processing
        and model development by bringing useful packages together into
        a streamlined pipeline.  This package is wrapper for functions
        related to the analysis of point visible and near-infrared
        reflectance measurements. It includes visualization, filtering,
        aggregation, preprocessing, cross-validation set formation,
        model training, and prediction functions to enable open-source
        association of spectral and reference data. This package is
        documented in a peer-reviewed manuscript in the Plant Phenome
        Journal <doi:10.1002/ppj2.20012>.  Specialized cross-validation
        schemes are described in detail in Jarquín et al. (2017)
        <doi:10.3835/plantgenome2016.12.0130>. Example data is from
        Ikeogu et al. (2017) <doi:10.1371/journal.pone.0188918>.
License: MIT + file LICENSE
URL: https://GoreLab.github.io/waves/, https://github.com/GoreLab/waves
BugReports: https://github.com/GoreLab/waves/issues
Depends: R (>= 4.1.0)
Imports: caret, dplyr, ggplot2, lifecycle, magrittr, pls, prospectr,
        randomForest, readr, rlang, scales, spectacles, stringr,
        tibble, tidyr (>= 1.0), tidyselect
Suggests: testthat (>= 2.1.0), knitr, rmarkdown
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr, rmarkdown
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libabsl-dev libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev make libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev
        libssl-dev libproj-dev libsqlite3-dev libudunits2-dev
        libx11-dev
Repository: https://gorelab.r-universe.dev
Date/Publication: 2026-06-10 14:34:48 UTC
RemoteUrl: https://github.com/gorelab/waves
RemoteRef: HEAD
RemoteSha: 2cf4636fdb6e7e963fe52daf60c199f04d4bc599
NeedsCompilation: no
Packaged: 2026-06-10 20:44:31 UTC; root
Author: Jenna Hershberger [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3147-6867>),
  Michael Gore [ths],
  NSF BREAD IOS-1543958 [fnd]